Xanthomonas euroxanthea sp. nov., a new xanthomonad species including pathogenic and non-pathogenic strains of walnut.
Identifieur interne : 000244 ( Main/Exploration ); précédent : 000243; suivant : 000245Xanthomonas euroxanthea sp. nov., a new xanthomonad species including pathogenic and non-pathogenic strains of walnut.
Auteurs : Leonor Martins [Portugal] ; Camila Fernandes [Portugal] ; Jochen Blom [Allemagne] ; Nay C. Dia [Suisse] ; Joël F. Pothier [Suisse] ; Fernando Tavares [Portugal]Source :
- International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2020.
Abstract
We describe a novel species isolated from walnut (Juglans regia) which comprises non-pathogenic and pathogenic strains on walnut. The isolates, obtained from a single ornamental walnut tree showing disease symptoms, grew on yeast extract-dextrose-carbonate agar as mucoid yellow colonies characteristic of Xanthomonas species. Pathogenicity assays showed that while strain CPBF 424T causes disease in walnut, strain CPBF 367 was non-pathogenic on walnut leaves. Biolog GEN III metabolic profiles disclosed some differences between strains CPBF 367 and CPBF 424T and other xanthomonads. Multilocus sequence analysis with seven housekeeping genes (fyuA, gyrB, rpoD, atpD, dnaK, efp, glnA) grouped these strains in a distinct cluster from Xanthomonas arboricola pv. juglandis and closer to Xanthomonas prunicola and Xanthomonas arboricola pv. populi. Average nucleotide identity (ANI) analysis results displayed similarity values below 93 % to X. arboricola strains. Meanwhile ANI and digital DNA-DNA hybridization similarity values were below 89 and 50 % to non-arboricola Xanthomonas strains, respectively, revealing that they do not belong to any previously described Xanthomonas species. Furthermore, the two strains show over 98 % similarity to each other. Genomic analysis shows that strain CPBF 424T harbours a complete type III secretion system and several type III effector proteins, in contrast with strain CPBF 367, shown to be non-pathogenic in plant bioassays. Taking these data altogether, we propose that strains CPBF 367 and CPBF 424T belong to a new species herein named Xanthomonas euroxanthea sp. nov., with CPBF 424T (=LMG 31037T=CCOS 1891T=NCPPB 4675T) as the type strain.
DOI: 10.1099/ijsem.0.004386
PubMed: 32924921
Affiliations:
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wicri:level="1"><nlm:affiliation>Bioinformatics and Systems Biology, Justus-Liebig-University Giessen, Giessen, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Bioinformatics and Systems Biology, Justus-Liebig-University Giessen, Giessen</wicri:regionArea><wicri:noRegion>Giessen</wicri:noRegion><wicri:noRegion>Giessen</wicri:noRegion><wicri:noRegion>Giessen</wicri:noRegion></affiliation></author><author><name sortKey="Dia, Nay C" sort="Dia, Nay C" uniqKey="Dia N" first="Nay C" last="Dia">Nay C. Dia</name><affiliation wicri:level="1"><nlm:affiliation>Molecular Plant Breeding, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland.</nlm:affiliation><country xml:lang="fr">Suisse</country><wicri:regionArea>Molecular Plant Breeding, Institute of Agricultural Sciences, ETH Zurich, Zurich</wicri:regionArea><wicri:noRegion>Zurich</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Environmental Genomics and Systems Biology, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), Wädenswil, Switzerland.</nlm:affiliation><country xml:lang="fr">Suisse</country><wicri:regionArea>Environmental Genomics and Systems Biology, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), Wädenswil</wicri:regionArea><wicri:noRegion>Wädenswil</wicri:noRegion></affiliation></author><author><name sortKey="Pothier, Joel F" sort="Pothier, Joel F" uniqKey="Pothier J" first="Joël F" last="Pothier">Joël F. Pothier</name><affiliation wicri:level="1"><nlm:affiliation>Environmental Genomics and Systems Biology, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), Wädenswil, Switzerland.</nlm:affiliation><country xml:lang="fr">Suisse</country><wicri:regionArea>Environmental Genomics and Systems Biology, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), Wädenswil</wicri:regionArea><wicri:noRegion>Wädenswil</wicri:noRegion></affiliation></author><author><name sortKey="Tavares, Fernando" sort="Tavares, Fernando" uniqKey="Tavares F" first="Fernando" last="Tavares">Fernando Tavares</name><affiliation wicri:level="1"><nlm:affiliation>CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO, Laboratório Associado, Universidade do Porto, Vairão, Portugal.</nlm:affiliation><country xml:lang="fr">Portugal</country><wicri:regionArea>CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO, Laboratório Associado, Universidade do Porto, Vairão</wicri:regionArea><wicri:noRegion>Vairão</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>FCUP, Faculdade de Ciências, Departamento de Biologia, Universidade do Porto, Rua do Campo Alegre s/n, Porto, Portugal.</nlm:affiliation><country xml:lang="fr">Portugal</country><wicri:regionArea>FCUP, Faculdade de Ciências, Departamento de Biologia, Universidade do Porto, Rua do Campo Alegre s/n, Porto</wicri:regionArea><wicri:noRegion>Porto</wicri:noRegion></affiliation></author></analytic><series><title level="j">International journal of systematic and evolutionary microbiology</title><idno type="eISSN">1466-5034</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">We describe a novel species isolated from walnut (<i>Juglans regia</i>) which comprises non-pathogenic and pathogenic strains on walnut. The isolates, obtained from a single ornamental walnut tree showing disease symptoms, grew on yeast extract-dextrose-carbonate agar as mucoid yellow colonies characteristic of <i>Xanthomonas</i> species. Pathogenicity assays showed that while strain CPBF 424<sup>T</sup> causes disease in walnut, strain CPBF 367 was non-pathogenic on walnut leaves. Biolog GEN III metabolic profiles disclosed some differences between strains CPBF 367 and CPBF 424<sup>T</sup> and other xanthomonads. Multilocus sequence analysis with seven housekeeping genes (<i>fyuA</i>, <i>gyrB</i>, <i>rpoD</i>, <i>atpD</i>, <i>dnaK</i>, <i>efp</i>, <i>glnA</i>) grouped these strains in a distinct cluster from <i>Xanthomonas arboricola</i> pv. <i>juglandis</i> and closer to <i>Xanthomonas prunicola</i> and <i>Xanthomonas arboricola</i> pv. <i>populi</i>. Average nucleotide identity (ANI) analysis results displayed similarity values below 93 % to <i>X. arboricola</i> strains. Meanwhile ANI and digital DNA-DNA hybridization similarity values were below 89 and 50 % to non-<i>arboricola Xanthomonas</i> strains, respectively, revealing that they do not belong to any previously described <i>Xanthomonas</i> species. Furthermore, the two strains show over 98 % similarity to each other. Genomic analysis shows that strain CPBF 424<sup>T</sup> harbours a complete type III secretion system and several type III effector proteins, in contrast with strain CPBF 367, shown to be non-pathogenic in plant bioassays. Taking these data altogether, we propose that strains CPBF 367 and CPBF 424<sup>T</sup> belong to a new species herein named <i>Xanthomonas euroxanthea</i> sp. nov., with CPBF 424<sup>T</sup> (=LMG 31037<sup>T</sup>=CCOS 1891<sup>T</sup>=NCPPB 4675<sup>T</sup>) as the type strain.</div></front></TEI><pubmed><MedlineCitation Status="Publisher" Owner="NLM"><PMID Version="1">32924921</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>14</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1466-5034</ISSN><JournalIssue CitedMedium="Internet"><PubDate><Year>2020</Year><Month>Sep</Month><Day>14</Day></PubDate></JournalIssue><Title>International journal of systematic and evolutionary microbiology</Title><ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation></Journal><ArticleTitle><i>Xanthomonas euroxanthea</i> sp. nov., a new xanthomonad species including pathogenic and non-pathogenic strains of walnut.</ArticleTitle><ELocationID EIdType="doi" ValidYN="Y">10.1099/ijsem.0.004386</ELocationID><Abstract><AbstractText>We describe a novel species isolated from walnut (<i>Juglans regia</i>) which comprises non-pathogenic and pathogenic strains on walnut. The isolates, obtained from a single ornamental walnut tree showing disease symptoms, grew on yeast extract-dextrose-carbonate agar as mucoid yellow colonies characteristic of <i>Xanthomonas</i> species. Pathogenicity assays showed that while strain CPBF 424<sup>T</sup> causes disease in walnut, strain CPBF 367 was non-pathogenic on walnut leaves. Biolog GEN III metabolic profiles disclosed some differences between strains CPBF 367 and CPBF 424<sup>T</sup> and other xanthomonads. Multilocus sequence analysis with seven housekeeping genes (<i>fyuA</i>, <i>gyrB</i>, <i>rpoD</i>, <i>atpD</i>, <i>dnaK</i>, <i>efp</i>, <i>glnA</i>) grouped these strains in a distinct cluster from <i>Xanthomonas arboricola</i> pv. <i>juglandis</i> and closer to <i>Xanthomonas prunicola</i> and <i>Xanthomonas arboricola</i> pv. <i>populi</i>. Average nucleotide identity (ANI) analysis results displayed similarity values below 93 % to <i>X. arboricola</i> strains. Meanwhile ANI and digital DNA-DNA hybridization similarity values were below 89 and 50 % to non-<i>arboricola Xanthomonas</i> strains, respectively, revealing that they do not belong to any previously described <i>Xanthomonas</i> species. Furthermore, the two strains show over 98 % similarity to each other. Genomic analysis shows that strain CPBF 424<sup>T</sup> harbours a complete type III secretion system and several type III effector proteins, in contrast with strain CPBF 367, shown to be non-pathogenic in plant bioassays. Taking these data altogether, we propose that strains CPBF 367 and CPBF 424<sup>T</sup> belong to a new species herein named <i>Xanthomonas euroxanthea</i> sp. nov., with CPBF 424<sup>T</sup> (=LMG 31037<sup>T</sup>=CCOS 1891<sup>T</sup>=NCPPB 4675<sup>T</sup>) as the type strain.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Martins</LastName><ForeName>Leonor</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>FCUP, Faculdade de Ciências, Departamento de Biologia, Universidade do Porto, Rua do Campo Alegre s/n, Porto, Portugal.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO, Laboratório Associado, Universidade do Porto, Vairão, Portugal.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fernandes</LastName><ForeName>Camila</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>FCUP, Faculdade de Ciências, Departamento de Biologia, Universidade do Porto, Rua do Campo Alegre s/n, Porto, Portugal.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO, Laboratório Associado, Universidade do Porto, Vairão, Portugal.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>INIAV, Instituto Nacional de Investigação Agrária e Veterinária, Av. da República, Quinta do Marquês, Oeiras, Portugal.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Blom</LastName><ForeName>Jochen</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Bioinformatics and Systems Biology, Justus-Liebig-University Giessen, Giessen, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dia</LastName><ForeName>Nay C</ForeName><Initials>NC</Initials><AffiliationInfo><Affiliation>Molecular Plant Breeding, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Environmental Genomics and Systems Biology, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), Wädenswil, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pothier</LastName><ForeName>Joël F</ForeName><Initials>JF</Initials><AffiliationInfo><Affiliation>Environmental Genomics and Systems Biology, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), Wädenswil, Switzerland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tavares</LastName><ForeName>Fernando</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO, Laboratório Associado, Universidade do Porto, Vairão, Portugal.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>FCUP, Faculdade de Ciências, Departamento de Biologia, Universidade do Porto, Rua do Campo Alegre s/n, Porto, Portugal.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>09</Month><Day>14</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Int J Syst Evol Microbiol</MedlineTA><NlmUniqueID>100899600</NlmUniqueID><ISSNLinking>1466-5026</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Xanthomonas</Keyword><Keyword MajorTopicYN="N">new species</Keyword><Keyword MajorTopicYN="N">pathogenicity</Keyword><Keyword MajorTopicYN="N">walnut</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>9</Month><Day>14</Day><Hour>15</Hour><Minute>41</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>9</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>9</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>aheadofprint</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32924921</ArticleId><ArticleId IdType="doi">10.1099/ijsem.0.004386</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Allemagne</li><li>Portugal</li><li>Suisse</li></country></list><tree><country name="Portugal"><noRegion><name sortKey="Martins, Leonor" sort="Martins, Leonor" uniqKey="Martins L" first="Leonor" last="Martins">Leonor Martins</name></noRegion><name sortKey="Fernandes, Camila" sort="Fernandes, Camila" uniqKey="Fernandes C" first="Camila" last="Fernandes">Camila Fernandes</name><name sortKey="Fernandes, Camila" sort="Fernandes, Camila" uniqKey="Fernandes C" first="Camila" last="Fernandes">Camila Fernandes</name><name sortKey="Fernandes, Camila" sort="Fernandes, Camila" uniqKey="Fernandes C" first="Camila" last="Fernandes">Camila Fernandes</name><name sortKey="Martins, Leonor" sort="Martins, Leonor" uniqKey="Martins L" first="Leonor" last="Martins">Leonor Martins</name><name sortKey="Tavares, Fernando" sort="Tavares, Fernando" uniqKey="Tavares F" first="Fernando" last="Tavares">Fernando Tavares</name><name sortKey="Tavares, Fernando" sort="Tavares, Fernando" uniqKey="Tavares F" first="Fernando" last="Tavares">Fernando Tavares</name></country><country name="Allemagne"><noRegion><name sortKey="Blom, Jochen" sort="Blom, Jochen" uniqKey="Blom J" first="Jochen" last="Blom">Jochen Blom</name></noRegion></country><country name="Suisse"><noRegion><name sortKey="Dia, Nay C" sort="Dia, Nay C" uniqKey="Dia N" first="Nay C" last="Dia">Nay C. Dia</name></noRegion><name sortKey="Dia, Nay C" sort="Dia, Nay C" uniqKey="Dia N" first="Nay C" last="Dia">Nay C. Dia</name><name sortKey="Pothier, Joel F" sort="Pothier, Joel F" uniqKey="Pothier J" first="Joël F" last="Pothier">Joël F. Pothier</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:32924921" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PlantPathoEffV1
| This area was generated with Dilib version V0.6.38. |  |